Sample expression matrices for CSD — data-expression • csdR

Sample expression matrices of thyroid gland tissue for thyroid cancer patients and healthy individuals. These datasets were pre-processed by Gulla et al. (2019). Due to size requirements, only 1000 randomly selected genes are provided in the dataset. Number of samples are 399 and 504 in the healthy controls and the sick samples, respectively.

data(normal_expression)
data(sick_expression)

Format

Numeric matrices of normalized gene expression. Genes are in columns, whereas samples are in rows.

Source

For the expression matrix for healthy individuals, GenotypeTissue Expression (GTEx) V7. For the thyroid cancer patients, the data are obtained for the Thyroid Cancer project (THCA) from The Cancer Genome Atlas (TCGA).

References

Gulla, Almaas, Eivind, & Voigt, André (2019). An integrated systems biology approach to investigate transcriptomic data of thyroid carcinoma. NTNU. http://hdl.handle.net/11250/2621725