• Jakob Peder Pettersen. Author, maintainer.


Source: inst/CITATION

Pettersen JP, Almaas E (2022). “csdR, an R package for differential co-expression analysis.” BMC Bioinformatics, 23(1), 79. ISSN 1471-2105, doi:10.1186/s12859-022-04605-1, https://doi.org/10.1186/s12859-022-04605-1.

  author = {Jakob P Pettersen and Eivind Almaas},
  title = {csdR, an R package for differential co-expression analysis},
  journal = {BMC Bioinformatics},
  year = {2022},
  month = {Feb},
  day = {19},
  volume = {23},
  number = {1},
  pages = {79},
  abstract = {Differential co-expression network analysis has become an important tool to gain understanding of biological phenotypes and diseases. The CSD algorithm is a method to generate differential co-expression networks by comparing gene co-expressions from two different conditions. Each of the gene pairs is assigned conserved (C), specific (S) and differentiated (D) scores based on the co-expression of the gene pair between the two conditions. The result of the procedure is a network where the nodes are genes and the links are the gene pairs with the highest C-, S-, and D-scores. However, the existing CSD-implementations suffer from poor computational performance, difficult user procedures and lack of documentation.},
  issn = {1471-2105},
  doi = {10.1186/s12859-022-04605-1},
  url = {https://doi.org/10.1186/s12859-022-04605-1},